{"id":1624,"date":"2013-06-17T09:40:30","date_gmt":"2013-06-17T01:40:30","guid":{"rendered":"http:\/\/www.hzaumycology.com\/chenlianfu_blog\/?p=1624"},"modified":"2013-09-10T16:53:08","modified_gmt":"2013-09-10T08:53:08","slug":"variant-calling-%e8%bd%af%e4%bb%b6","status":"publish","type":"post","link":"http:\/\/www.chenlianfu.com\/?p=1624","title":{"rendered":"Variant calling \u8f6f\u4ef6"},"content":{"rendered":"<h1>1. SNP\u548cINDEL caller<\/h1>\n<h2>1.1 GATK<\/h2>\n<h2>1.2 SAMtools<\/h2>\n<h2>1.3 DISCOVAR<\/h2>\n<p>DISCOVAR\u7684\u5b98\u65b9\u535a\u5ba2\uff1a<a href=\"http:\/\/www.broadinstitute.org\/software\/discovar\/blog\/\" target=\"_blank\">http:\/\/www.broadinstitute.org\/software\/discovar\/blog\/<\/a>\u3002\u8be5\u8f6f\u4ef6\u548cALLPATHS-LG\u662f\u540c\u4e00\u4e2a\u7ec4\u7ec7\u5f00\u53d1\u7684\uff0c\u662f\u5728ALLPATHS-LG\u7684\u57fa\u7840\u4e0a\u5f00\u53d1\u7684\uff0c\u7528\u4e8e\u57fa\u56e0\u7ec4\u7684\u7ec4\u88c5\u548cVariants\u7684\u53d1\u6398\u30022013.3 \u516c\u5e03\u51fa\u4e86\u8be5\u8f6f\u4ef6\u3002<\/p>\n<h2>1.4 PyroHMMvar<\/h2>\n<p>PyroHMMvar: a sensitive and accurate method to call short INDELs and SNPs for Ion Torrent and 454 data. 2013.8.28\u53d1\u8868\u5728bioinformatics\u4e0a\u3002<\/p>\n","protected":false},"excerpt":{"rendered":"<p>1. SNP\u548cINDEL caller 1.1 GATK 1.2 SAMtool &hellip; <a href=\"http:\/\/www.chenlianfu.com\/?p=1624\">\u7ee7\u7eed\u9605\u8bfb <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":[],"categories":[1],"tags":[],"_links":{"self":[{"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/posts\/1624"}],"collection":[{"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=1624"}],"version-history":[{"count":2,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/posts\/1624\/revisions"}],"predecessor-version":[{"id":1863,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/posts\/1624\/revisions\/1863"}],"wp:attachment":[{"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=1624"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=1624"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=1624"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}