{"id":1902,"date":"2013-10-10T12:00:48","date_gmt":"2013-10-10T04:00:48","guid":{"rendered":"http:\/\/www.hzaumycology.com\/chenlianfu_blog\/?p=1902"},"modified":"2013-10-11T09:26:20","modified_gmt":"2013-10-11T01:26:20","slug":"amos%e7%9a%84%e5%ae%89%e8%a3%85%e5%92%8c%e4%bd%bf%e7%94%a8","status":"publish","type":"post","link":"http:\/\/www.chenlianfu.com\/?p=1902","title":{"rendered":"AMOS\u7684\u5b89\u88c5\u548c\u4f7f\u7528"},"content":{"rendered":"<p>AMOS\u662f\u6700\u65e9\u7684\u6bd4\u8f83\u57fa\u56e0\u7ec4\u7ec4\u88c5\u8f6f\u4ef6\u3002<\/p>\n<h1>AMOS\u7684\u5b89\u88c5<\/h1>\n<p>AMOS\u7684\u5b89\u88c5\u9700\u8981\u5148\u5b89\u88c5<a href=\"http:\/\/mummer.sourceforge.net\/\" target=\"_blank\">MUMer<\/a>\u548cQt\u3002<\/p>\n<pre>\r\n$ wget http:\/\/jaist.dl.sourceforge.net\/project\/mummer\/mummer\/3.23\/MUMmer3.23.tar.gz\r\n$ tar zxf MUMmer3.23.tar.gz\r\n$ cd MUMmer3.23\/\r\n$ make check\r\n$ make install\r\n$ echo PATH=$PWD\/:'$PATH' >> ~\/.bashrc\r\n\r\n$ wget http:\/\/download.qt-project.org\/official_releases\/qt\/4.8\/4.8.5\/qt-everywhere-opensource-src-4.8.5.tar.gz\r\n$ tar zxf qt-everywhere-opensource-src-4.8.5.tar.gz\r\n$ cd qt-everywhere-opensource-src-4.8.5\r\n$ .\/configure\r\n$ sudo yum install gstreamer-plugins-base-devel*\r\n$ gmake -j 8\r\n$ sudo gmake install\r\n$ echo 'PTAH=\/usr\/local\/Trolltech\/Qt-4.8.5\/bin:$PATH' >> ~\/.bashrc\r\n\r\n$ wget http:\/\/nchc.dl.sourceforge.net\/project\/amos\/amos\/3.1.0\/amos-3.1.0.tar.gz\r\n$ tar zxf amos-3.1.0.tar.gz\r\n$ cd amos-3.1.0\r\n$ .\/configure --prefix=\/opt\/biosoft\/amos \r\n$ make -j 8      \u7136\u540e\u62a5\u9519\uff0c\u63a5\u7740\u8fdb\u884c\u4e0b\u4e24\u6b65\uff08\u6b64\u6b65\u7701\u7565\u4e86\u8c8c\u4f3c\u4f1a\u51fa\u5176\u5b83\u95ee\u9898\uff09\r\n$ sed '1i\\#include <getopt.h>' src\/Align\/find-tandem.cc > tmp\r\n$ mv tmp src\/Align\/find-tandem.cc\r\n$ make -j 8      \u7ee7\u7eed\u62a5\u9519,\u4e0d\u7ba1\r\n$ make -j 8      make \u6210\u529f\r\n$ make install\r\n<\/pre>\n","protected":false},"excerpt":{"rendered":"<p>AMOS\u662f\u6700\u65e9\u7684\u6bd4\u8f83\u57fa\u56e0\u7ec4\u7ec4\u88c5\u8f6f\u4ef6\u3002 AMOS\u7684\u5b89\u88c5 AMOS\u7684\u5b89\u88c5\u9700\u8981\u5148\u5b89\u88c5M &hellip; <a href=\"http:\/\/www.chenlianfu.com\/?p=1902\">\u7ee7\u7eed\u9605\u8bfb <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":[],"categories":[3],"tags":[],"_links":{"self":[{"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/posts\/1902"}],"collection":[{"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=1902"}],"version-history":[{"count":11,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/posts\/1902\/revisions"}],"predecessor-version":[{"id":1913,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/posts\/1902\/revisions\/1913"}],"wp:attachment":[{"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=1902"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=1902"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=1902"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}