{"id":2319,"date":"2015-08-25T16:52:39","date_gmt":"2015-08-25T08:52:39","guid":{"rendered":"http:\/\/www.chenlianfu.com\/?p=2319"},"modified":"2015-08-25T16:52:39","modified_gmt":"2015-08-25T08:52:39","slug":"%e4%bd%bf%e7%94%a8aspera%e4%bb%8encbi%e6%88%96ebi%e9%ab%98%e9%80%9f%e4%b8%8b%e8%bd%bd%e6%95%b0%e6%8d%ae","status":"publish","type":"post","link":"http:\/\/www.chenlianfu.com\/?p=2319","title":{"rendered":"\u4f7f\u7528Aspera\u4eceNCBI\u6216EBI\u9ad8\u901f\u4e0b\u8f7d\u6570\u636e"},"content":{"rendered":"<h1>1. Aspera\u7b80\u4ecb<\/h1>\n<p><a href=\"http:\/\/http:\/\/asperasoft.com\" target=\"_blank\">Aspera<\/a>\u63d0\u4f9b\u4e86\u5927\u6587\u4ef6\u9ad8\u901f\u4f20\u8f93\u65b9\u6848\uff0c\u9002\u5408\u4e8e\u5927\u6570\u636e\u7684\u4f20\u8f93\u3002\u5ba2\u670d\u7aef\u7684\u4f7f\u7528\u662f\u514d\u8d39\u7684\u3002<\/p>\n<h1>2. Aspera\u4e0b\u8f7d\u548c\u5b89\u88c5<\/h1>\n<p>Aspera\u4e0b\u8f7d\u7f51\u9875\uff1a <a href=\"http:\/\/downloads.asperasoft.com\/connect2\/\" target=\"_blank\">http:\/\/downloads.asperasoft.com\/connect2\/<\/a>\u3002<\/p>\n<pre>\r\n$ wget http:\/\/d3gcli72yxqn2z.cloudfront.net\/connect\/bin\/aspera-connect-3.5.1.92523-linux-64.tar.gz\r\n$ tar zxf aspera-connect-3.5.1.92523-linux-64.tar.gz\r\n$ sh aspera-connect-3.5.1.92523-linux-64.sh\r\n$ echo 'PATH=$PATH:~\/.aspera\/connect\/bin\/' >> ~\/.bashrc\r\n$ source ~\/.bashrc\r\n$ ascp --help\r\n\r\n\u8f6f\u4ef6\u5b89\u88c5\u5728 ~\/.aspera\/connect\/ \u76ee\u5f55\u4e0b\u3002\r\n<\/pre>\n<h1>3. Aspera \u7684\u4f7f\u7528<\/h1>\n<p>\u4f8b\u5b50\uff0c\u4f7f\u7528 Aspera \u9ad8\u901f\u4e0b\u8f7d NCBI\u6216 EBI \u4e0a\u7684\u6570\u636e\uff1a<\/p>\n<pre>\r\n$ ascp -T -l 200M -i ~\/.aspera\/connect\/etc\/asperaweb_id_dsa.openssh \\\r\n  --host=ftp-private.ncbi.nlm.nih.gov --user=anonftp --mode=recv \\\r\n  \/sra\/sra-instant\/reads\/ByRun\/sra\/ERR\/ERR105\/ERR105009\/ERR105009.sra .\/\r\n$ ascp -T -l 200M -i ~\/.aspera\/connect\/etc\/asperaweb_id_dsa.openssh \\\r\n  anonftp@ftp-private.ncbi.nlm.nih.gov:\/sra\/sra-instant\/reads\/ByRun\/sra\/ERR\/ERR105\/ERR105009\/ERR105009.sra .\/\r\n\r\n$ ascp -T -l 200M -i ~\/.aspera\/connect\/etc\/asperaweb_id_dsa.openssh \\\r\n  --host=fasp.sra.ebi.ac.uk --user=era-fasp --mode=recv \\\r\n  \/vol1\/fastq\/ERR105\/ERR105009\/ERR105009_1.fastq.gz .\/\r\n$ ascp -T -l 200M -i ~\/.aspera\/connect\/etc\/asperaweb_id_dsa.openssh \\\r\n  era-fasp@fasp.sra.ebi.ac.uk:\/vol1\/fastq\/ERR105\/ERR105009\/ERR105009_1.fastq.gz .\/\r\n<\/pre>\n<p>Aspera \u7684\u7528\u6cd5\u548c\u7b80\u5355\u53c2\u6570\uff1a<\/p>\n<pre>\r\nAspera\u7684\u7528\u6cd5\uff1a\r\n$ ascp [\u53c2\u6570] \u76ee\u6807\u6587\u4ef6 \u76ee\u7684\u5730\u5740\r\n\r\nAspera\u7684\u5e38\u7528\u53c2\u6570\uff1a\r\n-T\r\n    \u4e0d\u8fdb\u884c\u52a0\u5bc6\u3002\u82e5\u4e0d\u6dfb\u52a0\u6b64\u53c2\u6570\uff0c\u53ef\u80fd\u4f1a\u4e0b\u8f7d\u4e0d\u4e86\u3002\r\n-i string\r\n    \u8f93\u5165\u79c1\u94a5\uff0c\u5b89\u88c5 aspera \u540e\u6709\u5728\u76ee\u5f55 ~\/.aspera\/connect\/etc\/ \u4e0b\u6709\u51e0\u4e2a\u79c1\u94a5\uff0c\u4f7f\u7528 linux \u670d\u52a1\u5668\u7684\u65f6\u5019\u4e00\u822c\u4f7f\u7528 asperaweb_id_dsa.openssh \u6587\u4ef6\u4f5c\u4e3a\u79c1\u94a5\u3002\r\n--host=string\r\n    ftp\u7684host\u540d\uff0cNCBI\u7684\u4e3aftp-private.ncbi.nlm.nih.gov\uff1bEBI\u7684\u4e3afasp.sra.ebi.ac.uk\u3002\r\n--user=string\r\n    \u7528\u6237\u540d\uff0cNCBI\u7684\u4e3aanonftp\uff0cEBI\u7684\u4e3aera-fasp\u3002\r\n--mode=string\r\n    \u9009\u62e9\u6a21\u5f0f\uff0c\u4e0a\u4f20\u4e3a send\uff0c\u4e0b\u8f7d\u4e3a recv\u3002\r\n-l string\r\n    \u8bbe\u7f6e\u6700\u5927\u4f20\u8f93\u901f\u5ea6\uff0c\u6bd4\u5982\u8bbe\u7f6e\u4e3a 200M \u5219\u8868\u793a\u6700\u5927\u4f20\u8f93\u901f\u5ea6\u4e3a 200m\/s\u3002\u82e5\u4e0d\u8bbe\u7f6e\u8be5\u53c2\u6570\uff0c\u5219\u4e00\u822c\u53ef\u8fbe\u523010m\/s\u7684\u901f\u5ea6\uff0c\u800c\u8bbe\u7f6e\u4e86\uff0c\u4f20\u8f93\u901f\u5ea6\u53ef\u4ee5\u66f4\u9ad8\u3002\r\n<\/pre>\n","protected":false},"excerpt":{"rendered":"<p>1. Aspera\u7b80\u4ecb Aspera\u63d0\u4f9b\u4e86\u5927\u6587\u4ef6\u9ad8\u901f\u4f20\u8f93\u65b9\u6848\uff0c\u9002\u5408\u4e8e\u5927\u6570\u636e\u7684\u4f20\u8f93 &hellip; <a href=\"http:\/\/www.chenlianfu.com\/?p=2319\">\u7ee7\u7eed\u9605\u8bfb <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":[],"categories":[5,3],"tags":[10,71],"_links":{"self":[{"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/posts\/2319"}],"collection":[{"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=2319"}],"version-history":[{"count":1,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/posts\/2319\/revisions"}],"predecessor-version":[{"id":2320,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/posts\/2319\/revisions\/2320"}],"wp:attachment":[{"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=2319"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=2319"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=2319"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}