{"id":2654,"date":"2019-02-27T22:06:39","date_gmt":"2019-02-27T14:06:39","guid":{"rendered":"http:\/\/www.chenlianfu.com\/?p=2654"},"modified":"2019-02-27T22:17:27","modified_gmt":"2019-02-27T14:17:27","slug":"%e4%bd%bf%e7%94%a8bgi-online-cli%e4%b8%8b%e8%bd%bd%e5%8d%8e%e5%a4%a7%e5%9f%ba%e5%9b%a0%e9%87%8a%e6%94%be%e7%9a%84%e6%95%b0%e6%8d%ae","status":"publish","type":"post","link":"http:\/\/www.chenlianfu.com\/?p=2654","title":{"rendered":"\u4f7f\u7528BGI Online CLI\u4e0b\u8f7d\u534e\u5927\u57fa\u56e0\u91ca\u653e\u7684\u6570\u636e"},"content":{"rendered":"

1. \u534e\u5927\u57fa\u56e0\u91ca\u653e\u6570\u636e\u90ae\u4ef6\u4fe1\u606f<\/h1>\n

\u5728\u534e\u5927\u57fa\u56e0\u6d4b\u5e8f\u5b8c\u6210\u540e\uff0c\u91ca\u653e\u6570\u636e\u7684\u90ae\u4ef6\u4fe1\u606f\u793a\u4f8b\uff1a<\/p>\n

XXX\u8001\u5e08\uff1a\r\n\r\n\u60a8\u597d\uff01\r\n\r\n\u60a8\u8be5\u9879\u76ee XXXXX \u6570\u636e\u5df2\u4e0a\u4f20\uff0c\u8bf7\u6309\u7167\u4ee5\u4e0b\u8bf4\u660e\u64cd\u4f5c\uff1a\r\n\r\n1. \u4e0b\u8f7dGUI\u8f6f\u4ef6\u5e76\u89e3\u538b\uff0c\u94fe\u63a5\uff1ahttps:\/\/pan.genomics.cn\/ucdisk\/s\/AZjime\r\nWindows64\u4f4d\u7cfb\u7edf\uff08\u63a8\u8350\u4f7f\u7528\uff09\uff1a\u53cc\u51fbGUI-win\\GUI-win-3.0\u76ee\u5f55\u4e0bWindows\u6279\u5904\u7406\u6587\u4ef6bgionline_gui.bat\uff0c\u6253\u5f00\u767b\u5f55\u754c\u9762\r\n\r\nWindows32\u4f4d\u7cfb\u7edf\uff1a\u53c2\u8003\u4e0a\u8ff0\u94fe\u63a5\u4e0b\u7684\u5e2e\u52a9\u6587\u6863\r\n\r\nOS X\u548cLinux\u7cfb\u7edf\uff1a\u5c06\u5f53\u524d\u8def\u5f84\u79fb\u5230\u89e3\u538b\u6587\u4ef6\u5939\uff0c\u5728\u547d\u4ee4\u884c\u6267\u884c\u201csh bgionline.sh\u201d\u767b\u5f55\u754c\u9762\r\n\r\n2. \u8f93\u5165\u8d26\u53f7\u3001\u5bc6\u7801\r\n\u8d26\u53f7\uff1a20190227F18FTSCCWLI4389\r\n\u5bc6\u7801\uff1aWHFUNrdmE_20190227\r\n<\/pre>\n
2. \u5b89\u88c5BGI Online CLI<\/h1>\n
\u82e5\u5728windonws\u56fe\u5f62\u5316\u754c\u9762\u4e2d\u4e0b\u8f7d\u6570\u636e\uff0c\u5219\u6bd4\u8f83\u7b80\u5355\u65b9\u4fbf\u3002\u82e5\u6570\u636e\u91cf\u8f83\u5927\uff0c\u63a8\u8350\u4f7f\u7528Linux\u547d\u4ee4\u884c\u4e0b\u8f7d\u6570\u636e\uff0c\u76f4\u63a5\u4e0b\u8f7d\u5230\u670d\u52a1\u5668\u4e0a\u3002\u5219\u9700\u8981\u5b89\u88c5BGI Online CLI\u8f6f\u4ef6\uff1a<\/h1>\n
\u5b89\u88c5\u8f6f\u4ef6\r\n$ pip install bgionline\r\n\u66f4\u65b0\u8f6f\u4ef6\r\n$ pip install --upgrade bgionline \r\n<\/pre>\n
3. \u4f7f\u7528\u547d\u4ee4\u884c\u65b9\u5f0f\u4e0b\u8f7d\u6570\u636e<\/h1>\n
$ bo login<\/strong>\r\nLogging into https:\/\/app.bgionline.cn:1001\r\nUsername: 20190227F18FTSCCWLI4389\r\nPassword: WHFUNrdmE_20190227\r\n    \u8f93\u5165\u90ae\u4ef6\u4e2d\u7684\u7528\u6237\u540d\u548c\u5bc6\u7801\uff0c\u5373\u53ef\u751f\u6210\u76f8\u5e94\u7684\u914d\u7f6e\u6587\u4ef6\u5939~\/.bgionline\/\u3002\r\nou are now logged in. Your configurations are stored in \/share\/disk02_8T\/home\/chenlianfu\/.bgionline\/setting. \r\n\r\nUse bo select to choose your working project...\r\n\r\nAvailable projects:\r\n\r\n+-------+--------------------------------------+-------------------------+\r\n| index | project id                           | project name            |\r\n+-------+--------------------------------------+-------------------------+\r\n|   0   | 3d7d64df-b0a6-439a-a443-fb73058f9925 | 20190227F18FTSCCWLJ4389 |\r\n+-------+--------------------------------------+-------------------------+\r\nPick a numbered choice :0\r\n    \u9009\u62e9\u4e00\u4e2a\u76ee\u6807\u9879\u76ee\u3002\r\nSetting current project to: 20190227F18FTSCCWLJ4389 \r\n\r\n$ bo ls<\/strong>\r\nF18FTSCCWLJ4389_FUNrdmD\/\r\n    \u53ef\u4ee5\u5217\u51fa\u9009\u5b9a\u9879\u76ee\u4e2d\u7684\u6587\u4ef6\u4fe1\u606f\r\n$ bo tree\r\n\/\r\n\u2514\u2500\u2500F18FTSCCWLJ4389_FUNrdmD\r\n   \u2514\u2500\u2500Upload_Delivery_F18FTSCCWLJ4389_FUNrdmD_PureSequence\r\n        \u251c\u2500\u2500BGI_result\r\n        \u2502    \u2514\u2500\u2500Separate\r\n\r\n4 directories \r\n    \u4ee5\u6811\u5f62\u5f0f\u5217\u51fa\u9009\u5b9a\u9879\u76ee\u4e2d\u6240\u6709\u7684\u6587\u4ef6\u5939\u5c42\u6b21\u4fe1\u606f\r\n\r\n$ bo dowload \/ .\/<\/strong>\r\n    \u5c06\u9879\u76ee\u4e2d\u7684\u6240\u6709\u6587\u4ef6\u5939\u4e0b\u8f7d\u5230\u5f53\u524d\u5de5\u4f5c\u76ee\u5f55\u4e0b\u3002\r\n<\/pre>\n","protected":false},"excerpt":{"rendered":"
1. \u534e\u5927\u57fa\u56e0\u91ca\u653e\u6570\u636e\u90ae\u4ef6\u4fe1\u606f \u5728\u534e\u5927\u57fa\u56e0\u6d4b\u5e8f\u5b8c\u6210\u540e\uff0c\u91ca\u653e\u6570\u636e\u7684\u90ae\u4ef6\u4fe1\u606f\u793a\u4f8b\uff1a  … \u7ee7\u7eed\u9605\u8bfb →<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":[],"categories":[1],"tags":[],"_links":{"self":[{"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/posts\/2654"}],"collection":[{"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=2654"}],"version-history":[{"count":5,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/posts\/2654\/revisions"}],"predecessor-version":[{"id":2659,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/posts\/2654\/revisions\/2659"}],"wp:attachment":[{"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=2654"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=2654"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=2654"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}