{"id":2934,"date":"2019-09-05T19:53:50","date_gmt":"2019-09-05T11:53:50","guid":{"rendered":"http:\/\/www.chenlianfu.com\/?p=2934"},"modified":"2019-09-05T23:23:39","modified_gmt":"2019-09-05T15:23:39","slug":"r%e8%bd%af%e4%bb%b6%e5%b8%b8%e8%a7%84%e6%93%8d%e4%bd%9c","status":"publish","type":"post","link":"http:\/\/www.chenlianfu.com\/?p=2934","title":{"rendered":"R\u8f6f\u4ef6\u5e38\u89c4\u64cd\u4f5c"},"content":{"rendered":"\n<h2>\u5728Linux\u7cfb\u7edf\u4e0a\u5b89\u88c5R\u8f6f\u4ef6<\/h2>\n\n\n\n<pre class=\"wp-block-preformatted\">wget https:\/\/mirrors.tuna.tsinghua.edu.cn\/CRAN\/src\/base\/R-3\/R-3.5.3.tar.gz -P ~\/software\/<br>tar zxf ~\/software\/R-3.5.3.tar.gz<br>cd R-3.5.3\/<br>.\/configure --prefix=\/opt\/sysoft\/R-3.5.3<br>make -j 4<br>make install<br>cd .. &amp;&amp; rm R-3.5.3\/ -rf<br>echo 'PATH=\/opt\/sysoft\/R-3.5.3\/bin\/:$PATH' &gt;&gt; ~\/.bashrc<br>source ~\/.bashrc <br><\/pre>\n\n\n\n<h2>\u81ea\u5df1\u8bbe\u7f6eR\u5305\u7684\u5b89\u88c5\u6e90\u5e76\u5b89\u88c5R\u5305<\/h2>\n\n\n\n<p>\u8bbe\u7f6eCRAN\u6e90\uff0c\u7528\u4e8e\u5b89\u88c5R\u5305\u3002<\/p>\n\n\n\n<pre class=\"wp-block-preformatted\">R<br>&gt; options(repos=\"http:\/\/mirrors.tuna.tsinghua.edu.cn\/CRAN\/\")<br>&gt; install.packages(c('ggplot2', 'gplots', 'ape'))<br>&gt; install.packages(\"devtools\", repos=\"http:\/\/mirrors.tuna.tsinghua.edu.cn\/CRAN\") <\/pre>\n\n\n\n<p> \u8bbe\u7f6e Bioconductor\u6e90\uff0c\u7528\u4e8e\u5b89\u88c5\u751f\u4fe1R\u5305\u3002<\/p>\n\n\n\n<pre class=\"wp-block-preformatted\">&gt; source(\"http:\/\/bioconductor.org\/biocLite.R\")<br>&gt; options(BioC_mirror=\"http:\/\/mirrors.ustc.edu.cn\/bioc\/\")<br>&gt; biocLite(c('edgeR', 'fastcluster', 'limma', 'DESeq2', 'Biobase', 'qvalue', 'seqLogo', 'pathview'))<\/pre>\n\n\n\n<h2>\u4e0b\u8f7d\u5e76\u5b89\u88c5\u8f6f\u4ef6\u5305\u65f6\u63d0\u793a\u9519\u8befstatus was &#8216;SSL connect error&#8217;<\/h2>\n\n\n\n<p>\u539f\u56e0\u662fnss\u7248\u672c\u8f83\u4f4e\uff0c\u66f4\u65b0nss\u5373\u53ef\u3002<\/p>\n\n\n\n<pre class=\"wp-block-preformatted\"># yum -y update nss<\/pre>\n","protected":false},"excerpt":{"rendered":"<p>\u5728Linux\u7cfb\u7edf\u4e0a\u5b89\u88c5R\u8f6f\u4ef6 wget https:\/\/mirrors.tuna &hellip; <a href=\"http:\/\/www.chenlianfu.com\/?p=2934\">\u7ee7\u7eed\u9605\u8bfb <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":[],"categories":[1],"tags":[],"_links":{"self":[{"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/posts\/2934"}],"collection":[{"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=2934"}],"version-history":[{"count":2,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/posts\/2934\/revisions"}],"predecessor-version":[{"id":2940,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/posts\/2934\/revisions\/2940"}],"wp:attachment":[{"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=2934"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=2934"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=2934"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}