{"id":3545,"date":"2021-05-12T20:56:35","date_gmt":"2021-05-12T12:56:35","guid":{"rendered":"http:\/\/www.chenlianfu.com\/?p=3545"},"modified":"2021-05-12T21:01:44","modified_gmt":"2021-05-12T13:01:44","slug":"%e5%af%b9protein%e5%ba%8f%e5%88%97%e8%bf%9b%e8%a1%8cinterpro%e6%b3%a8%e9%87%8a","status":"publish","type":"post","link":"http:\/\/www.chenlianfu.com\/?p=3545","title":{"rendered":"\u5bf9Protein\u5e8f\u5217\u8fdb\u884cInterPro\u6ce8\u91ca"},"content":{"rendered":"\n

\u4f7f\u7528EBI\u7684InterPro\u6570\u636e\u5e93\uff0c\u80fd\u5bf9\u86cb\u767d\u5e8f\u5217\u901a\u8fc7\u7ed3\u6784\u57df\u65b9\u6cd5\u8fdb\u884c\u57fa\u56e0\u5bb6\u65cf\u5206\u7c7b\u6ce8\u91ca\u3002InterPro\u6570\u636e\u5e93\u6574\u5408\u4e8613\u4e2a\u57fa\u56e0\u5bb6\u65cf\u3001\u7ed3\u6784\u57df\u548c\u529f\u80fd\u4f4d\u70b9\u7684\u6570\u636e\u5e93\uff0c\u5305\u62ecPfam\u548cCDD\u7b49\u3002\u6b64\u5916\uff0cInterPro\u4e5f\u6574\u5408\u4e86\u8de8\u819c\u533a\u548c\u4fe1\u53f7\u80bd\u7b49\u7ed3\u6784\u5206\u6790\u65b9\u6cd5\u3002<\/p>\n\n\n\n

1. \u4f7f\u7528EBI\u63d0\u4f9b\u7684InterPro\u7f51\u9875\u5de5\u5177<\/a>\u5bf9\u5c11\u91cf\u86cb\u767d\u5e8f\u5217\u8fdb\u884c\u6ce8\u91ca\u3002<\/h2>\n\n\n\n

\u5728\u7f51\u9875\u5de5\u5177\u4e2d\u53ef\u4ee5\u8f93\u5165\u591a\u6761\u5e8f\u5217\u8fdb\u884cInterPro\u6ce8\u91ca\uff0c\u4f46\u8981\u6c42\u4e00\u6b21\u63d0\u4ea4\u86cb\u767d\u5e8f\u5217\u7684\u6c28\u57fa\u9178\u603b\u6570\u91cf\u4e0d\u8d85\u8fc740,000\u3002\u6309\u6b63\u5e38\u4e00\u4e2a\u86cb\u767d\u5e8f\u5217\u7684\u6c28\u57fa\u9178\u957f\u5ea6\u7ea6\u4e3a500aa\u7b97\uff0c\u4e00\u6b21\u6027\u63d0\u4ea4\u6700\u5927\u7684\u86cb\u767d\u5e8f\u5217\u6570\u91cf\u7ea6\u4e3a80\u6761\u3002\u56e0\u6b64\uff0c\u8981\u5bf9\u57fa\u56e0\u7ec4\u5c42\u9762\u7ea6\u4e0a\u4e07\u4e2a\u57fa\u56e0\u8fdb\u884cInterPro\u6ce8\u91ca\uff0c\u5219\u91c7\u7528\u547d\u4ee4\u884c\u7684\u65b9\u5f0f\u8fdb\u884c\u8ba1\u7b97\u3002<\/p>\n\n\n\n

2. \u4f7f\u7528EBI\u63d0\u4f9b\u7684InterProScan 5\u7f51\u9875API\u670d\u52a1<\/a>\u8fdb\u884c\u6279\u91cf\u5316InterPro\u6ce8\u91ca<\/h2>\n\n\n\n

EBI\u5b98\u7f51\u63d0\u4f9b\u4e86iprscan5.pl<\/a>\u6216iprscan5.py<\/a>\u7a0b\u5e8f\uff0c\u53ef\u4ee5\u7528\u4e8e\u5c06\u672c\u5730\u8ba1\u7b97\u673a\u4e0a\u7684fasta\u5e8f\u5217\u6587\u4ef6\u63d0\u4ea4\u5230InterProScan 5\u7f51\u9875API\u670d\u52a1\uff0c\u8fdb\u884c\u6ce8\u91ca\u540e\uff0c\u5c06\u7ed3\u679c\u8fd4\u56de\u7ed9\u672c\u5730\u3002\u6b64\u65f6\uff0c\u4e0d\u9700\u8981\u5728\u672c\u5730\u8ba1\u7b97\u673a\u4e0a\u8fdb\u884c\u8ba1\u7b97\uff0c\u53ea\u9700\u8981\u8054\u7f51\u63d0\u4ea4\u6570\u636e\uff0c\u63a5\u53d7\u7ed3\u679c\u5373\u53ef\u3002\u7136\u540e\uff0c\u53ef\u4ee5\u81ea\u5df1\u7f16\u5199\u7a0b\u5e8f\u5bf9\u5168\u57fa\u56e0\u7ec4\u7684\u86cb\u767d\u5e8f\u5217\u8fdb\u884c\u5206\u5272\uff0c\u518d\u5e76\u884c\u5316\u5316\u8c03\u7528iprscan5.pl\u7a0b\u5e8f\u5c06\u6570\u636e\u4e0a\u4f20\u5e76\u8fdb\u884c\u6ce8\u91ca\u3002\u9700\u8981\u503c\u5f97\u6ce8\u610f\u7684\u662f\uff0c\u5e76\u884c\u5316\u63d0\u4ea4\u7684\u4efb\u52a1\u6570\u91cf\u8981\u5c11\u4e8e30\u3002<\/p>\n\n\n\n

\u9700\u8981\u6ce8\u610f\u7684\u662f\uff0ciprscan5.pl\u6216iprscan5.py\u7a0b\u5e8f\u8fdb\u884c\u5206\u6790\u4e0d\u518d\u80fd\u5f97\u5230svg\u548chtml\u7ed3\u679c\u4e86\u3002\u82e5\u9700\u8981\u8fd9\u4e24\u79cd\u7ed3\u679c\uff0c\u5219\u9700\u8981\u672c\u5730\u5316\u90e8\u7f72InterPro\u6570\u636e\u5e93\u548cInterProScan\u8f6f\u4ef6\u8fdb\u884c\u5206\u6790\u3002<\/p>\n\n\n\n

3. \u672c\u5730\u5316\u90e8\u7f72InterPro\u6570\u636e\u5e93\u548cInterProScan\u8f6f\u4ef6\u8fdb\u884cInterPro\u6ce8\u91ca<\/h2>\n\n\n\n

\u4e0b\u8f7dInterPro\u6570\u636e\u5e93\u548cInterProScan\u8f6f\u4ef6\u3002\u5f53\u524d\u6700\u65b0\u7248\u672c\u4e3aInterProScan\u00a05.51-85.0<\/a>\uff0c\u5373InterProScan\u8f6f\u4ef6\u7248\u672c\u4e3a5.51\uff0c\u6570\u636e\u5e93\u7248\u672c\u4e3a85.0\u3002<\/p>\n\n\n\n

lftp -e 'pget -n 20 http:\/\/ftp.ebi.ac.uk\/pub\/software\/unix\/iprscan\/5\/5.51-85.0\/interproscan-5.51-85.0-64-bit.tar.gz; exit'\n<\/code><\/pre>\n\n\n\n
\u4f7f\u7528InterProScan\u5bf9\u5168\u57fa\u56e0\u7ec4\u86cb\u767d\u5e8f\u5217\u8fdb\u884c\u6ce8\u91ca\u5206\u6790\uff1a<\/p>\n\n\n\n
<\/code><\/pre>\n","protected":false},"excerpt":{"rendered":"
\u4f7f\u7528EBI\u7684InterPro\u6570\u636e\u5e93\uff0c\u80fd\u5bf9\u86cb\u767d\u5e8f\u5217\u901a\u8fc7\u7ed3\u6784\u57df\u65b9\u6cd5\u8fdb\u884c\u57fa\u56e0\u5bb6\u65cf\u5206\u7c7b\u6ce8 … \u7ee7\u7eed\u9605\u8bfb →<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":[],"categories":[1],"tags":[],"_links":{"self":[{"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/posts\/3545"}],"collection":[{"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=3545"}],"version-history":[{"count":3,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/posts\/3545\/revisions"}],"predecessor-version":[{"id":3548,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/posts\/3545\/revisions\/3548"}],"wp:attachment":[{"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=3545"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=3545"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=3545"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}