{"id":997,"date":"2013-04-16T22:40:27","date_gmt":"2013-04-16T14:40:27","guid":{"rendered":"http:\/\/www.hzaumycology.com\/chenlianfu_blog\/?p=997"},"modified":"2013-04-19T18:58:12","modified_gmt":"2013-04-19T10:58:12","slug":"velvet%e7%9a%84%e5%ae%89%e8%a3%85%e5%92%8c%e4%bd%bf%e7%94%a8","status":"publish","type":"post","link":"http:\/\/www.chenlianfu.com\/?p=997","title":{"rendered":"Velvet\u7684\u5b89\u88c5\u548c\u4f7f\u7528"},"content":{"rendered":"<h1>\u4e00. Velvet\u7b80\u4ecb<\/h1>\n<p><a href=\"http:\/\/www.ebi.ac.uk\/~zerbino\/velvet\/\" target=\"_blank\">Velvet<\/a> \u662f <a href=\"http:\/\/www.ebi.ac.uk\/\" target=\"_blank\">EBI<\/a> \u7684 <a href=\"http:\/\/www.ebi.ac.uk\/~zerbino\" target=\"_blank\">Daniel Zerbino<\/a> and <a href=\"http:\/\/www.ebi.ac.uk\/~birney\/\" target=\"_blank\">Ewan Birney<\/a> \u5f00\u53d1\u7684\u5229\u7528short reads\u7ec4\u88c5\u57fa\u56e0\u7ec4\u7684\u8f6f\u4ef6\u3002<br \/>\nVelvet\u4f5c\u4e3a\u4e00\u79cd<em>de novo<\/em>\u57fa\u56e0\u7ec4\u7ec4\u88c5\u8f6f\u4ef6\uff0c\u53ef\u5229\u7528\u7684reads\u5305\u62ec Illumina reads \u548c 454 reads\u3002<br \/>\n\u5f15\u7528\u6587\u732e(2008)\uff1a<a href=\"http:\/\/genome.cshlp.org\/content\/18\/5\/821.full?sid=194cb14e-2120-436e-9103-cf643dc4937a\" target=\"_blank\">Velvet: algorithms for de novo short read assembly using de Bruijn graphs<\/a>.<\/p>\n<h1>\u4e8c. Velvet\u4e0b\u8f7d\u4e0e\u5b89\u88c5<\/h1>\n<p>make &#8216;CATEGORIES=57&#8217; &#8216;MAXKMERLENGTH=75&#8217; &#8216;BIGASSEMBLY=1&#8217; &#8216;LONGSEQUENCES=1&#8217; &#8216;OPENMP=1&#8217; &#8216;BUNDLEDZLIB=1&#8217;<\/p>\n","protected":false},"excerpt":{"rendered":"<p>\u4e00. Velvet\u7b80\u4ecb Velvet \u662f EBI \u7684 Daniel Zerbin &hellip; <a href=\"http:\/\/www.chenlianfu.com\/?p=997\">\u7ee7\u7eed\u9605\u8bfb <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":[],"categories":[3],"tags":[39],"_links":{"self":[{"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/posts\/997"}],"collection":[{"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=997"}],"version-history":[{"count":4,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/posts\/997\/revisions"}],"predecessor-version":[{"id":1064,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=\/wp\/v2\/posts\/997\/revisions\/1064"}],"wp:attachment":[{"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=997"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=997"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/www.chenlianfu.com\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=997"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}