Processed file: rpoA.fasta.align
Number of sequences: 3
Alignment assumed to be: DNA
New number of positions: 256 (selected positions are underlined in blue)
10 20 30 40 50 60
=========+=========+=========+=========+=========+=========+
LBX12 ---gtagagccacttgagcgtggatatggtacaactctgggtaactccttacgtcgtatc
LBX21B --cgtagagccacttgagcgtggatatggtacaactctgggtaactccttacgtcgtatc
X60 ttcgtagagccacttgagcgtggatatggtacaactctgggtaactccttacgtcgtatc
##########################################################
70 80 90 100 110 120
=========+=========+=========+=========+=========+=========+
LBX12 ctcttatcctcactccctggtgccgctgtaacatcaatccagatagatggtgtactgcac
LBX21B ctcttatcctcactccctggtgccgctgtaacatcaatccagatagatggtgtactgcac
X60 ctcttatcctcactccctggtgccgctgtaacatcaatccagatagatggtgtactgcac
############################################################
130 140 150 160 170 180
=========+=========+=========+=========+=========+=========+
LBX12 gaattctcgacaattgaaggcgttgtggaagatgttacaacgattatcttacacattaaa
LBX21B gaattctcgacaattgaaggcgttgtggaagatgttacaacgattatcttacacattaaa
X60 gaattctcgacaattgaaggcgttgtggaagatgttacaacgattatcttacacattaaa
############################################################
190 200 210 220 230 240
=========+=========+=========+=========+=========+=========+
LBX12 aagcttgcattgaaaatctactctgatgaagagaagacgttagaaattgatgtacagggc
LBX21B aagcttgcattgaaaatctactctgatgaagagaagacgttagaaattgatgtacagggc
X60 aagcttgcattgaaaatctactctgatgaagagaagacgttagaaattgatgtacagggc
############################################################
250
=========+========
LBX12 gaaggaactgtaacggca
LBX21B gaaggaactgtaacggca
X60 gaaggaactgtaacggca
##################
Parameters used Minimum Number Of Sequences For A Conserved Position: 2 Minimum Number Of Sequences For A Flanking Position: 2 Maximum Number Of Contiguous Nonconserved Positions: 8 Minimum Length Of A Block: 10 Allowed Gap Positions: With Half
Flank positions of the 1 selected block(s) Flanks: [3 258] New number of positions in rpoA.fasta.align-gb: 256 (99% of the original 258 positions)