Processed file: ropB.fasta.align
Number of sequences: 3
Alignment assumed to be: DNA
New number of positions: 364 (selected positions are underlined in blue)
10 20 30 40 50 60
=========+=========+=========+=========+=========+=========+
LBX12 t-----------------------------------------------------------
LBX21B ------------------------------------------------------------
X60 cgttgcatgttggtacccatgagggcacggttggagtcatcgttttccaggaacgggata
70 80 90 100 110 120
=========+=========+=========+=========+=========+=========+
LBX12 ----------------------------------taacatcggtttgatcaactcacttt
LBX21B -----------------------------------aacatcggtttgatcaactcacttt
X60 catgctgtcgcagcagaaacaacctgcttaggtgatacatccatgtaatccacacggttt
#########################
130 140 150 160 170 180
=========+=========+=========+=========+=========+=========+
LBX12 catcttatgcaaaagtaaaccgttttggcttcatcgaaacgccttatcgccgtgttgacc
LBX21B catcttatgcaaaagtaaaccgttttggcttcatcgaaacgccttatcgccgtgttgacc
X60 ---------ctggaaacaacggtgttctctccgcggaaacgggcgatgatgctgtcatca
############################################################
190 200 210 220 230 240
=========+=========+=========+=========+=========+=========+
LBX12 ctgaaacagggaaggtaacgggcagaatcgattacttaactgctgatgaagaggataact
LBX21B ctgaaacagggaaggtaacgggcagaatcgattacttaactgctgatgaagaggataact
X60 ataaatgagccatcatcatcaagacgagcgttcgcctgagcgacaacatagttatcctct
############################################################
250 260 270 280 290 300
=========+=========+=========+=========+=========+=========+
LBX12 atgttgtcgctcaggcgaacgctcgtcttgatgatgatggctcatttattgatgacagca
LBX21B atgttgtcgctcaggcgaacgctcgtcttgatgatgatggctcatttattgatgacagca
X60 tcatcagcagttaagtaatcgattctgcccgttaccttccctgtttcagggtcaacacgg
############################################################
310 320 330 340 350 360
=========+=========+=========+=========+=========+=========+
LBX12 tcatcgcccgtttccgcggagagaacaccgttgtttcc---------agaaaccgtgtgg
LBX21B tcatcgcccgtttccgcggagagaacaccgttgtttcc---------agaaaccgtgtgg
X60 cgataaggcgtttcgatgaagccaaaacggtttacttttgcataagatgaaagtgagttg
###################################### #############
370 380 390 400 410 420
=========+=========+=========+=========+=========+=========+
LBX12 attacatggatgtatcacctaagcaggttgtttctgctgcgacagcatgtatcccgttcc
LBX21B attacatggatgtatcacctaagcaggttgtttctgctgcgacagcatgtatcccgttcc
X60 atcaaaccgatgtt----------------------------------------------
############################################################
430 440 450 460 470
=========+=========+=========+=========+=========+=
LBX12 tggaaaacgatgactccaaccgtgccctcatgggtaccaacatgcaac-ga
LBX21B tggaaaacgatgactccaaccgtgccctcatgggtaccaacatgcaacaga
X60 -------------------------------------------------aa
################################################
Parameters used Minimum Number Of Sequences For A Conserved Position: 2 Minimum Number Of Sequences For A Flanking Position: 2 Maximum Number Of Contiguous Nonconserved Positions: 8 Minimum Length Of A Block: 10 Allowed Gap Positions: With Half
Flank positions of the 2 selected block(s) Flanks: [96 338] [348 468] New number of positions in ropB.fasta.align-gb: 364 (77% of the original 471 positions)