Writing date: 2015-11-17.
The latest Human Genome assembly version is : GRCh38 (GCA_000001405.15) . GRch38: Genome Reference Consortium Human Reference 38.
The GRch38 genome browses:
UCSC http://genome.ucsc.edu/cgi-bin/hgGateway
Ensembl http://www.ensembl.org/Homo_sapiens/Info/Index
Vega http://vega.sanger.ac.uk/Homo_sapiens/Info/Index
GENCODE http://www.gencodegenes.org/human_biodalliance.html
The downloading website of GRch38 information in Ensembl: http://www.ensembl.org/info/data/ftp/index.html
I recommend to download gh38 sequence functional annotations from Ensembl: ftp://ftp.ensembl.org/pub/release-82/genbank/homo_sapiens/.
mdkir sequence_annotation cd sequence_annotation lftp -e "mirror -c --parallel=5 /pub/release-82/genbank/homo_sapiens/" ftp://ftp.ensembl.org cd ..
The downloading website of GRch38 information in GENCODE: http://www.gencodegenes.org/releases/23.html
I recommend to download gh38 fasta and gff3 files from GENCODE. These 2 files would be the main fasta and gff3 files for most users.
wget ftp://ftp.sanger.ac.uk/pub/gencode/Gencode_human/release_23/GRCh38.primary_assembly.genome.fa.gz wget ftp://ftp.sanger.ac.uk/pub/gencode/Gencode_human/release_23/gencode.v23.basic.annotation.gff3.gz